SLEAP

SLEAP is an open source deep-learning based framework for multi-animal pose tracking.

How to install

mkdir -p ~/miniconda3
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O ~/miniconda3/miniconda.sh
bash ~/miniconda3/miniconda.sh -b -u -p ~/miniconda3
~/miniconda3/bin/conda init bash

Log out and log in to reload shell environment

conda create -y -n sleap -c sleap -c nvidia -c conda-forge sleap=1.3.3

How to run

Login https://apps.hpc.ntnu.no to start Desktop on a compute node. Example:

Open terminal and run these commands:

conda activate sleap
sleap-label