Software on Idun

Idun has a plethora of software preinstalled. Please use module spider to see the full list of available modules and their corresponding versions. The following table provides an incomplete excerpt:

Type Software Description Usage on Idun
Compilers cython Optimizing compiler for Python and the Cython programming language.
GCC A compiler suite including a C, C++, Objective-C, Fortran, Ada, Go, and D compiler.
Intel A compiler suite including a C, C++, and Fortran compiler.
Applications Fluent Software suite for performing Computational Fluid Dynamics (CFD) simulations.
Matlab Programming language and numerical computing environment.
OpenFOAM C++ toolbox for performing CFD simulations and the development of numerical solvers.
Libraries Boost Set of C++ libraries providing support for tasks such as linear algebra, image processing, regular expressions, etc.
FFTW C library for computing the discrete Fourier transform in one or more dimensions. See here for more information
GDAL Translator library for raster and vector geospatial data formats.
GSL Numerial C/C++ library with a wide range of numerical routines. See here for more information
HDF5 Library for storing and organizing large amounts of (hierarchical) data. See here for more information
Hypre Library with scalable linear solvers and multgrid methods.
Intel MKL Library with optimized math routines.
Intel MPI Message-passing library implementing the MPICH specification.
Java Programming language.
METIS Set of programs for partitioning graphs and finite element meshes, as well as producing fill reducing orderings for sparse matrices.
MUMPS Parallel sparse direct solver for linear algebraic equations.
netCDF(-Fortran) Set of libraries and data formats for the creation, access, and sharing of array-oriented scientific data. See here for more information
OpenMPI Message-passing library implementing the MPICH specification.
OpenBLAS Optimized BLAS library. See here for more information
ParMETIS Extension of the METIS library.
PROJ Coordinate transformation software for geospatial coordinates.
ScaLAPACK Library of high-performance linear algebra routines.
TensorFlow Library for high performance numerical computations with strong support for machine and deep learning. See here for more information
UDUNITS C library for arithmetic manipulation of units and conversion of numeric values between compatible units.
Tools CMake Tools for building and testing package software.
Go Programming language.
ncview Visual browser for netCDF files. See here for more information
PAPI Tools for utilizing the performance counter hardware of microprocessors.
Python2/3 Programming language.
R Software environment for statistical computing and graphics.
Python/Packages Boost.Python C++ library enabling interoperability between C++ and Python.
h5py Python interface for the HDF5 binary data format.
matplotlib Plotting library for Python.
mpi4py Message Passing interface bindings for Python.
netcfd4-python Python interface to the netCDF C library.
numpy Package for scientific computing with Python.
pandas Data structures and data analysis tools for Python.
scipy Python software suite for mathematics, science, and engineering.
virtualenv Tool to create isolated Python environments.
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